Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter permease subunit | D5071_20880 | Not Available | Negative | 4585164 - 4588244 | 110299.0 |
| efflux rnd transporter periplasmic adaptor subunit | D5071_20885 | Not Available | Negative | 4588244 - 4589326 | 38283.7 |
| mipa/ompv family protein | D5071_20890 | Not Available | Negative | 4589353 - 4590168 | 29215.3 |
| dna-binding response regulator | D5071_20895 | Not Available | Positive | 4590321 - 4591010 | 25350.7 |
| hamp domain-containing protein | D5071_20900 | Not Available | Positive | 4591016 - 4592215 | 45413.9 |
| amino acid abc transporter | D5071_20905 | Not Available | Positive | 4592533 - 4593366 | 30963.9 |
| mmge/prpd family protein | D5071_20910 | Not Available | Negative | 4593403 - 4594812 | 50341.6 |
| amino acid abc transporter permease | D5071_20915 | Not Available | Positive | 4594963 - 4595640 | 25338.5 |
| amino acid abc transporter permease | D5071_20920 | Not Available | Positive | 4595649 - 4596314 | 25066.4 |
| amino acid abc transporter atp-binding protein | D5071_20925 | Not Available | Positive | 4596338 - 4597150 | 29817.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
