Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trk system potassium transporter trka | D5071_20680 | Not Available | Negative | 4536700 - 4538076 | 50125.5 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | D5071_20685 | Not Available | Negative | 4538133 - 4539422 | 48584.5 |
| methionyl-trna formyltransferase | D5071_20690 | Not Available | Negative | 4539490 - 4540437 | 34220.3 |
| peptide deformylase | D5071_20695 | Not Available | Negative | 4540461 - 4540973 | 19488.7 |
| dna-protecting protein dpra | D5071_20700 | Not Available | Positive | 4541102 - 4542223 | 40731.2 |
| duf494 domain-containing protein | D5071_20705 | Not Available | Positive | 4542195 - 4542668 | 18466.0 |
| hypothetical protein | D5071_20710 | Not Available | Positive | 4542689 - 4543246 | 20614.0 |
| l-threonylcarbamoyladenylate synthase type 1 tsac | D5071_20715 | Not Available | Positive | 4543239 - 4543808 | 20819.9 |
| shikimate dehydrogenase | D5071_20720 | Not Available | Positive | 4543828 - 4544655 | 29655.7 |
| duf1488 domain-containing protein | D5071_20725 | Not Available | Positive | 4544652 - 4544909 | 10136.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
