Pectobacterium carotovorum strain S1.15.11.2D

BacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium carotovorum strain S1.15.11.2D is a Gram-negative, facultative anaerobic bacterium characterized by its bacilli shape and mobility, attributed to the presence of flagella. It falls within the mesophilic temperature range, indicating that it thrives in moderate temperature conditions. This strain is free-living and exhibits a biotic relationship with various hosts, including species from the Viridiplantae kingdom such as Solanum tuberosum (potato), Daucus carota (carrot), Beta vulgaris subsp. vulgaris (beet), and Brassica oleracea var. italica (broccoli). Pectobacterium carotovorum is notably associated with plant diseases, causing soft rot and potato blackleg and soft rot, which can significantly impact agricultural productivity and food supply. The strain has a single replicon, which is relevant for its genetic stability and replication characteristics. The accession number for this strain is QZDH00000000.1, providing a reference for further genetic and genomic studies. In terms of ecological impact, Pectobacterium carotovorum strain S1.15.11.2D plays a critical role in the decomposition process of plant material in its environments. By causing soft rot in various crops, it contributes to nutrient cycling and soil health, although it also poses challenges for agricultural practices due to its pathogenicity. Understanding the biology and ecology of this strain is essential for developing management strategies to mitigate its negative effects on crops while appreciating its role in the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium carotovorum
Strainstrain S1.15.11.2D

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pectobacterium carotovorum strain S1.15.11.2D
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Viridiplantae, Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium carotovorum strain S1.15.11.2D contig_91, whole

Gene Summary

Adenine Count

1180518 bp

Thymine Count

1171732 bp

Guanine Count

1226236 bp

Cytosine Count

1240350 bp

Genome Length

4818836 bp

Protein-coding Genes

4141 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts iia-like nitrogen regulatory protein ptsnD5071_20325Not AvailableNegative4481920 - 448239317154.9
ribosome hibernation promoting factorD5071_20330Not AvailableNegative4482491 - 448277810943.2
rna polymerase factor sigma-54D5071_20335Not AvailableNegative4482802 - 448423553553.3
lipopolysaccharide abc transporter atp-binding proteinD5071_20340Not AvailableNegative4484285 - 448501026711.2
lipopolysaccharide abc transporter substrate-binding protein lptaD5071_20345Not AvailableNegative4485014 - 448558620918.8
lps export abc transporter periplasmic protein lptcD5071_20350Not AvailableNegative4485567 - 448613321120.0
3-deoxy-manno-octulosonate-8-phosphatase kdscD5071_20355Not AvailableNegative4486130 - 448669620593.9
arabinose-5-phosphate isomerase kdsdD5071_20360Not AvailableNegative4486716 - 448778938460.5
calcium/sodium antiporterD5071_20365Not AvailableNegative4487843 - 448880834194.1
phospholipid abc transporter atp-binding protein mlafD5071_20370Not AvailablePositive4489223 - 449003529387.8

Displaying genes 3961 – 3970 of 4263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725
Potato blacklegCausesPMC11677604
Potato soft rotCausesPMC5376619

Displaying health effects 1 – 3 of 3 in total