Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase | D5071_20175 | Not Available | Positive | 4445915 - 4446913 | 37178.1 |
| sugar-binding transcriptional regulator | D5071_20180 | Not Available | Negative | 4446995 - 4447939 | 33751.7 |
| lapa family protein | D5071_20185 | Not Available | Positive | 4448191 - 4448496 | 11413.2 |
| lipopolysaccharide assembly protein lapb | D5071_20190 | Not Available | Positive | 4448509 - 4449678 | 44744.4 |
| orotidine-5'-phosphate decarboxylase | D5071_20195 | Not Available | Positive | 4449861 - 4450604 | 26542.9 |
| stress response translation initiation inhibitor ycih | D5071_20200 | Not Available | Positive | 4450601 - 4450936 | 12017.7 |
| osmotically-inducible lipoprotein osmb | D5071_20205 | Not Available | Negative | 4450994 - 4451209 | 6857.45 |
| l-ribulose-5-phosphate 4-epimerase | D5071_20210 | Not Available | Positive | 4451544 - 4452239 | 25817.8 |
| hypothetical protein | D5071_20215 | Not Available | Negative | 4452511 - 4452867 | 13508.1 |
| hypothetical protein | D5071_20220 | Not Available | Negative | 4452864 - 4454903 | 78577.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
