Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligopeptide abc transporter substrate-binding protein oppa | D5071_20125 | Not Available | Positive | 4434409 - 4436043 | 61555.6 |
| gtp cyclohydrolase ii | D5071_20130 | Not Available | Negative | 4436116 - 4436709 | 21735.3 |
| phosphatidylglycerophosphatase b | D5071_20135 | Not Available | Positive | 4436999 - 4437775 | 30009.9 |
| d-ribose abc transporter substrate-binding protein | D5071_20140 | Not Available | Positive | 4438086 - 4439060 | 35250.0 |
| duf2291 domain-containing protein | D5071_20145 | Not Available | Positive | 4439105 - 4439737 | 22381.9 |
| sugar abc transporter atp-binding protein | D5071_20150 | Not Available | Positive | 4439737 - 4441290 | 56100.2 |
| abc transporter permease | D5071_20155 | Not Available | Positive | 4441292 - 4442389 | 38154.4 |
| transketolase | D5071_20160 | Not Available | Positive | 4442554 - 4443384 | 30077.8 |
| transketolase family protein | D5071_20165 | Not Available | Positive | 4443377 - 4444321 | 33302.1 |
| glycerol kinase | D5071_20170 | Not Available | Positive | 4444324 - 4445814 | 53230.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
