Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator slya | D5071_20075 | Not Available | Positive | 4422076 - 4422513 | 16560.2 |
| glycine zipper 2tm domain-containing protein | D5071_20080 | Not Available | Negative | 4422669 - 4423136 | 15450.5 |
| anhydro-n-acetylmuramic acid kinase | D5071_20085 | Not Available | Positive | 4423486 - 4424598 | 39189.6 |
| lysozyme inhibitor | D5071_20090 | Not Available | Positive | 4424696 - 4425013 | 11589.1 |
| pyridoxamine 5'-phosphate oxidase | D5071_20095 | Not Available | Positive | 4425121 - 4425804 | 26343.5 |
| tyrosine--trna ligase | D5071_20100 | Not Available | Positive | 4426040 - 4427317 | 47418.2 |
| pyridoxal kinase pdxy | D5071_20105 | Not Available | Positive | 4427402 - 4428262 | 31069.6 |
| glutathione transferase gsta | D5071_20110 | Not Available | Negative | 4428301 - 4428909 | 23174.3 |
| dicarboxylate/amino acid:cation symporter | D5071_20115 | Not Available | Positive | 4429795 - 4431099 | 46688.4 |
| aconitate hydratase acna | D5071_20120 | Not Available | Positive | 4431521 - 4434193 | 97987.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
