Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | D5071_20020 | Not Available | Negative | 4412373 - 4413311 | 34738.4 |
| mate family efflux transporter | D5071_20025 | Not Available | Negative | 4413539 - 4414912 | 49353.0 |
| riboflavin synthase subunit alpha | D5071_20030 | Not Available | Positive | 4415161 - 4415796 | 23017.8 |
| hth-type transcriptional repressor purr | D5071_20040 | Not Available | Negative | 4416719 - 4417744 | 37917.6 |
| ynhf family membrane protein | D5071_20045 | Not Available | Positive | 4418134 - 4418223 | 3084.91 |
| endopeptidase | D5071_20050 | Not Available | Negative | 4418456 - 4419307 | 31405.0 |
| grx4 family monothiol glutaredoxin | D5071_20055 | Not Available | Positive | 4419650 - 4420000 | 13046.7 |
| ribonuclease t | D5071_20060 | Not Available | Negative | 4420104 - 4420775 | 24224.6 |
| lactoylglutathione lyase | D5071_20065 | Not Available | Negative | 4420922 - 4421329 | 14815.5 |
| duf1289 domain-containing protein | D5071_20070 | Not Available | Positive | 4421607 - 4421846 | 9476.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
