Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| giy-yig nuclease family protein | D5071_19200 | Not Available | Negative | 4224971 - 4225270 | 11384.8 |
| deoxyribose-phosphate aldolase | D5071_19205 | Not Available | Positive | 4225916 - 4226695 | 27309.9 |
| thymidine phosphorylase | D5071_19210 | Not Available | Positive | 4226856 - 4228184 | 47235.9 |
| phosphopentomutase | D5071_19215 | Not Available | Positive | 4228274 - 4229497 | 44011.9 |
| purine-nucleoside phosphorylase | D5071_19220 | Not Available | Positive | 4229544 - 4230263 | 26096.4 |
| abc transporter atp-binding protein/permease | D5071_19225 | Not Available | Negative | 4230306 - 4232054 | 66873.8 |
| tonb-dependent siderophore receptor | D5071_19230 | Not Available | Negative | 4232103 - 4234598 | 91991.9 |
| duf4880 domain-containing protein | D5071_19235 | Not Available | Negative | 4234735 - 4235697 | 36254.0 |
| sigma-70 family rna polymerase sigma factor | D5071_19240 | Not Available | Negative | 4235694 - 4236236 | 20148.5 |
| lysr family transcriptional regulator | D5071_19245 | Not Available | Negative | 4236437 - 4237333 | 32541.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
