Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| qace family quaternary ammonium compound efflux smr transporter | D5071_18800 | Not Available | Negative | 4127561 - 4127977 | 15135.9 |
| choline tma-lyase-activating enzyme | D5071_18805 | Not Available | Negative | 4128024 - 4128974 | 35890.1 |
| choline trimethylamine-lyase | D5071_18810 | Not Available | Negative | 4129050 - 4131545 | 93202.1 |
| sdr family oxidoreductase | D5071_18815 | Not Available | Negative | 4132102 - 4132791 | 23840.0 |
| duf386 domain-containing protein | D5071_18820 | Not Available | Negative | 4132942 - 4133412 | 17207.5 |
| glycosyl hydrolase | D5071_18825 | Not Available | Negative | 4133676 - 4134863 | 43974.3 |
| sodium:solute symporter family protein | D5071_18830 | Not Available | Negative | 4134867 - 4136282 | 51270.1 |
| dihydrodipicolinate synthase family protein | D5071_18835 | Not Available | Negative | 4136321 - 4137205 | 31731.9 |
| iron-containing alcohol dehydrogenase | D5071_18840 | Not Available | Negative | 4137272 - 4138408 | 40645.4 |
| four-carbon acid sugar kinase family protein | D5071_18845 | Not Available | Positive | 4138644 - 4139972 | 46629.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
