Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit epsilon | D5071_18745 | Not Available | Negative | 4116347 - 4117084 | 27811.3 |
| ribonuclease hi | D5071_18750 | Not Available | Positive | 4117140 - 4117604 | 17328.4 |
| class i sam-dependent methyltransferase | D5071_18755 | Not Available | Negative | 4117624 - 4118334 | 27022.3 |
| hydroxyacylglutathione hydrolase | D5071_18760 | Not Available | Positive | 4118378 - 4119133 | 28312.8 |
| murein transglycosylase d | D5071_18765 | Not Available | Positive | 4119204 - 4120577 | 50373.2 |
| endonuclease/exonuclease/phosphatase family protein | D5071_18770 | Not Available | Negative | 4120646 - 4121434 | 29602.0 |
| pts ascorbate transporter subunit iic | D5071_18775 | Not Available | Positive | 4122195 - 4123454 | 44374.3 |
| fatty acid desaturase | D5071_18785 | Not Available | Negative | 4124145 - 4125182 | 40022.9 |
| acyl-coa dehydrogenase | D5071_18790 | Not Available | Negative | 4125228 - 4126850 | 61372.2 |
| qace family quaternary ammonium compound efflux smr transporter | D5071_18795 | Not Available | Negative | 4127217 - 4127543 | 11783.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
