Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine deaminase | D5071_18380 | Not Available | Positive | 4055332 - 4056222 | 32018.0 |
| nad-dependent malic enzyme | D5071_18385 | Not Available | Positive | 4056429 - 4058126 | 62638.9 |
| atp-dependent rna helicase rhle | D5071_18390 | Not Available | Negative | 4058310 - 4059725 | 51488.8 |
| hypothetical protein | D5071_18395 | Not Available | Negative | 4060053 - 4060871 | 30849.9 |
| abc transporter atp-binding protein | D5071_18400 | Not Available | Negative | 4060861 - 4061712 | 31187.7 |
| iron abc transporter permease | D5071_18405 | Not Available | Negative | 4061725 - 4062756 | 35790.2 |
| iron abc transporter permease | D5071_18410 | Not Available | Negative | 4062749 - 4063738 | 34310.4 |
| iron-siderophore abc transporter substrate-binding protein | D5071_18415 | Not Available | Negative | 4063735 - 4064754 | 38154.9 |
| tonb-dependent receptor | D5071_18420 | Not Available | Negative | 4064744 - 4066849 | 78067.6 |
| secretion protein hlyd | D5071_18425 | Not Available | Positive | 4067403 - 4068431 | 37583.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
