Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | D5071_01270 | Not Available | Positive | 254937 - 255845 | 33571.0 |
| yicc family protein | D5071_01275 | Not Available | Positive | 255944 - 256807 | 32889.5 |
| nucleotidyl transferase abieii/abigii toxin family protein | D5071_01280 | Not Available | Negative | 256909 - 257796 | 34315.3 |
| hypothetical protein | D5071_01285 | Not Available | Negative | 257823 - 258347 | 19463.7 |
| duf2357 domain-containing protein | D5071_01290 | Not Available | Negative | 258679 - 261168 | 95150.6 |
| duf3578 domain-containing protein | D5071_01295 | Not Available | Negative | 261187 - 263037 | 69643.0 |
| xre family transcriptional regulator | D5071_01300 | Not Available | Positive | 263564 - 263881 | 11679.0 |
| transcriptional regulator | D5071_01305 | Not Available | Negative | 263894 - 264154 | 9624.62 |
| xre family transcriptional regulator | D5071_01310 | Not Available | Positive | 264252 - 264578 | 12263.8 |
| hypothetical protein | D5071_01315 | Not Available | Positive | 264838 - 265065 | 8540.25 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
