Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| citrate synthase | D5071_18175 | Not Available | Positive | 4009039 - 4010325 | 48201.9 |
| voc family protein | D5071_18180 | Not Available | Negative | 4010380 - 4010805 | 16343.5 |
| endonuclease viii | D5071_18185 | Not Available | Negative | 4010821 - 4011612 | 30397.5 |
| pyroglutamyl-peptidase i | D5071_18190 | Not Available | Negative | 4011656 - 4012303 | 23046.8 |
| 5-oxoprolinase subunit pxpa | D5071_18195 | Not Available | Negative | 4012333 - 4013070 | 26129.4 |
| biotin-dependent carboxyltransferase family protein | D5071_18200 | Not Available | Negative | 4013060 - 4014004 | 34481.6 |
| 5-oxoprolinase subunit pxpb | D5071_18205 | Not Available | Negative | 4013998 - 4014654 | 23976.0 |
| type 2 gtp cyclohydrolase i | D5071_18210 | Not Available | Negative | 4014811 - 4015554 | 27127.5 |
| deoxyribodipyrimidine photo-lyase | D5071_18215 | Not Available | Negative | 4015547 - 4017025 | 56954.3 |
| duf1722 domain-containing protein | D5071_18220 | Not Available | Negative | 4017047 - 4018006 | 36673.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
