Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i toxin-antitoxin system syme family toxin | D5071_18025 | Not Available | Positive | 3979041 - 3979190 | 5304.38 |
| duf2247 family protein | D5071_18030 | Not Available | Negative | 3979242 - 3979763 | 19803.8 |
| hypothetical protein | D5071_18035 | Not Available | Negative | 3979760 - 3981117 | 45767.5 |
| sulfite exporter taue/safe family protein | D5071_18040 | Not Available | Positive | 3981366 - 3982082 | 25077.0 |
| lysr family transcriptional regulator | D5071_18045 | Not Available | Negative | 3982079 - 3982975 | 32757.5 |
| ggdef domain-containing protein | D5071_18050 | Not Available | Negative | 3983054 - 3983761 | 26524.5 |
| duf1987 domain-containing protein | D5071_18055 | Not Available | Negative | 3983748 - 3984200 | 17074.8 |
| hypothetical protein | D5071_18060 | Not Available | Negative | 3984202 - 3984756 | 20848.1 |
| cbs domain-containing protein | D5071_18065 | Not Available | Negative | 3984770 - 3986014 | 46697.1 |
| alpha/beta fold hydrolase | D5071_18070 | Not Available | Negative | 3986099 - 3987292 | 45018.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
