Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| escv/yscv/hrcv family type iii secretion system export apparatus protein | D5071_17925 | Not Available | Negative | 3952310 - 3954364 | 76339.9 |
| yopn family type iii secretion system gatekeeper subunit | D5071_17930 | Not Available | Negative | 3954417 - 3955535 | 42068.2 |
| escc/yscc/hrcc family type iii secretion system outer membrane ring protein | D5071_17935 | Not Available | Negative | 3955552 - 3957330 | 64712.5 |
| helix-turn-helix domain-containing protein | D5071_17940 | Not Available | Negative | 3957323 - 3958186 | 33037.6 |
| prgh/eprh family type iii secretion apparatus protein | D5071_17945 | Not Available | Positive | 3958644 - 3959894 | 48172.6 |
| escf/yscf/hrpa family type iii secretion system needle major subunit | D5071_17950 | Not Available | Positive | 3959887 - 3960153 | 9702.25 |
| type iii secretion system protein | D5071_17955 | Not Available | Positive | 3960202 - 3960525 | 11867.8 |
| escj/yscj/hrcj family type iii secretion inner membrane ring protein | D5071_17960 | Not Available | Positive | 3960525 - 3961340 | 29878.7 |
| type iii secretion system protein | D5071_17965 | Not Available | Positive | 3961330 - 3961881 | 21119.8 |
| type iii secretion protein | D5071_17970 | Not Available | Positive | 3961865 - 3962530 | 25969.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
