Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cesd/sycd/lcrh family type iii secretion system chaperone | D5071_17875 | Not Available | Negative | 3944834 - 3945346 | 19494.0 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | D5071_17880 | Not Available | Negative | 3945455 - 3946570 | 41969.7 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | D5071_17885 | Not Available | Negative | 3946587 - 3947351 | 28353.6 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | D5071_17890 | Not Available | Negative | 3947364 - 3947618 | 9413.95 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | D5071_17895 | Not Available | Negative | 3947615 - 3948286 | 24949.1 |
| type iii secretion system protein | D5071_17900 | Not Available | Negative | 3948279 - 3949196 | 35102.9 |
| hypothetical protein | D5071_17905 | Not Available | Negative | 3949193 - 3950152 | 35068.9 |
| type iii secretion system protein | D5071_17910 | Not Available | Negative | 3950133 - 3950594 | 18224.3 |
| flii/yscn family atpase | D5071_17915 | Not Available | Negative | 3950578 - 3951873 | 47960.9 |
| hypothetical protein | D5071_17920 | Not Available | Negative | 3951892 - 3952299 | 15012.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
