Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| opacity-associated protein a | D5071_17360 | Not Available | Negative | 3824707 - 3825420 | 26745.1 |
| peptidylprolyl isomerase | D5071_17365 | Not Available | Positive | 3825777 - 3826397 | 22309.5 |
| iron-sulfur cluster repair protein ytfe | D5071_17370 | Not Available | Negative | 3826472 - 3827137 | 24921.8 |
| indolepyruvate decarboxylase | D5071_17375 | Not Available | Negative | 3827406 - 3829073 | 60242.0 |
| duf2502 domain-containing protein | D5071_17380 | Not Available | Positive | 3829373 - 3829795 | 17275.9 |
| flavodoxin family protein | D5071_17385 | Not Available | Negative | 3829867 - 3830421 | 19378.7 |
| transcriptional regulator | D5071_17390 | Not Available | Positive | 3830612 - 3830995 | 14549.8 |
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | D5071_17395 | Not Available | Negative | 3831054 - 3833006 | 71660.5 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | D5071_17400 | Not Available | Positive | 3833212 - 3833952 | 27135.1 |
| ytfj family protein | D5071_17405 | Not Available | Negative | 3833972 - 3834541 | 21029.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
