Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yggs family pyridoxal phosphate-dependent enzyme | D5071_17255 | Not Available | Negative | 3806087 - 3806800 | 26079.3 |
| type iv pilus twitching motility protein pilt | D5071_17260 | Not Available | Positive | 3806821 - 3807837 | 36698.1 |
| diguanylate cyclase | D5071_17265 | Not Available | Negative | 3807806 - 3809638 | 69608.2 |
| hypothetical protein | D5071_17270 | Not Available | Negative | 3809991 - 3810185 | 7752.73 |
| hamp domain-containing protein | D5071_17275 | Not Available | Negative | 3810290 - 3811861 | 57426.8 |
| hth-type transcriptional repressor nsrr | D5071_17280 | Not Available | Positive | 3812170 - 3812595 | 15756.5 |
| ribonuclease r | D5071_17285 | Not Available | Positive | 3812637 - 3815093 | 92899.4 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | D5071_17290 | Not Available | Positive | 3815198 - 3815929 | 26547.2 |
| hamp domain-containing protein | D5071_17295 | Not Available | Negative | 3816005 - 3817540 | 55378.0 |
| hypothetical protein | D5071_17300 | Not Available | Positive | 3817820 - 3818017 | 7351.22 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
