Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid-a-disaccharide synthase | D5071_16775 | Not Available | Positive | 3701308 - 3702459 | 42337.0 |
| ribonuclease hii | D5071_16780 | Not Available | Positive | 3702481 - 3703077 | 21449.2 |
| dna polymerase iii subunit alpha | D5071_16785 | Not Available | Positive | 3703163 - 3706645 | 129733.0 |
| acetyl-coa carboxylase carboxyl transferase subunit alpha | D5071_16790 | Not Available | Positive | 3706658 - 3707617 | 35461.9 |
| voc family protein | D5071_16795 | Not Available | Positive | 3707744 - 3708133 | 14625.5 |
| trna lysidine(34) synthetase tils | D5071_16800 | Not Available | Positive | 3708138 - 3709457 | 49589.4 |
| rho-binding antiterminator | D5071_16805 | Not Available | Negative | 3709595 - 3709855 | 9595.29 |
| yaep family protein | D5071_16810 | Not Available | Negative | 3709842 - 3710042 | 7095.37 |
| yaeq family protein | D5071_16815 | Not Available | Positive | 3710283 - 3710837 | 21121.2 |
| copper homeostasis/adhesion lipoprotein nlpe | D5071_16820 | Not Available | Positive | 3710908 - 3711606 | 25392.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
