Pectobacterium carotovorum strain S1.15.11.2D

BacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium carotovorum strain S1.15.11.2D is a Gram-negative, facultative anaerobic bacterium characterized by its bacilli shape and mobility, attributed to the presence of flagella. It falls within the mesophilic temperature range, indicating that it thrives in moderate temperature conditions. This strain is free-living and exhibits a biotic relationship with various hosts, including species from the Viridiplantae kingdom such as Solanum tuberosum (potato), Daucus carota (carrot), Beta vulgaris subsp. vulgaris (beet), and Brassica oleracea var. italica (broccoli). Pectobacterium carotovorum is notably associated with plant diseases, causing soft rot and potato blackleg and soft rot, which can significantly impact agricultural productivity and food supply. The strain has a single replicon, which is relevant for its genetic stability and replication characteristics. The accession number for this strain is QZDH00000000.1, providing a reference for further genetic and genomic studies. In terms of ecological impact, Pectobacterium carotovorum strain S1.15.11.2D plays a critical role in the decomposition process of plant material in its environments. By causing soft rot in various crops, it contributes to nutrient cycling and soil health, although it also poses challenges for agricultural practices due to its pathogenicity. Understanding the biology and ecology of this strain is essential for developing management strategies to mitigate its negative effects on crops while appreciating its role in the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium carotovorum
Strainstrain S1.15.11.2D

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pectobacterium carotovorum strain S1.15.11.2D
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Viridiplantae, Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium carotovorum strain S1.15.11.2D contig_91, whole

Gene Summary

Adenine Count

1180518 bp

Thymine Count

1171732 bp

Guanine Count

1226236 bp

Cytosine Count

1240350 bp

Genome Length

4818836 bp

Protein-coding Genes

4141 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome recycling factorD5071_16725Not AvailablePositive3690621 - 369117820764.9
1-deoxy-d-xylulose-5-phosphate reductoisomeraseD5071_16730Not AvailablePositive3691422 - 369261842684.4
(2e,6e)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthaseD5071_16735Not AvailablePositive3692817 - 369357828448.8
phosphatidate cytidylyltransferaseD5071_16740Not AvailablePositive3693588 - 369444531309.5
sigma e protease regulator rsepD5071_16745Not AvailablePositive3694467 - 369582249122.1
outer membrane protein assembly factor bamaD5071_16750Not AvailablePositive3695858 - 369828788968.3
molecular chaperone skpD5071_16755Not AvailablePositive3698431 - 369892818307.9
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseD5071_16760Not AvailablePositive3698932 - 369995435812.3
3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabzD5071_16765Not AvailablePositive3700056 - 370051117129.9
acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferaseD5071_16770Not AvailablePositive3700516 - 370130428083.7

Displaying genes 3271 – 3280 of 4263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725
Potato blacklegCausesPMC11677604
Potato soft rotCausesPMC5376619

Displaying health effects 1 – 3 of 3 in total