Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome recycling factor | D5071_16725 | Not Available | Positive | 3690621 - 3691178 | 20764.9 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | D5071_16730 | Not Available | Positive | 3691422 - 3692618 | 42684.4 |
| (2e,6e)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase | D5071_16735 | Not Available | Positive | 3692817 - 3693578 | 28448.8 |
| phosphatidate cytidylyltransferase | D5071_16740 | Not Available | Positive | 3693588 - 3694445 | 31309.5 |
| sigma e protease regulator rsep | D5071_16745 | Not Available | Positive | 3694467 - 3695822 | 49122.1 |
| outer membrane protein assembly factor bama | D5071_16750 | Not Available | Positive | 3695858 - 3698287 | 88968.3 |
| molecular chaperone skp | D5071_16755 | Not Available | Positive | 3698431 - 3698928 | 18307.9 |
| udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferase | D5071_16760 | Not Available | Positive | 3698932 - 3699954 | 35812.3 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz | D5071_16765 | Not Available | Positive | 3700056 - 3700511 | 17129.9 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | D5071_16770 | Not Available | Positive | 3700516 - 3701304 | 28083.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
