Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yqcc family protein | D5071_16675 | Not Available | Positive | 3680690 - 3681040 | 13295.7 |
| trna pseudouridine(65) synthase truc | D5071_16680 | Not Available | Positive | 3681033 - 3681818 | 29846.7 |
| flavodoxin | D5071_16685 | Not Available | Positive | 3681886 - 3682341 | 16463.4 |
| duf3461 family protein | D5071_16690 | Not Available | Negative | 3682415 - 3682804 | 15212.1 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | D5071_16695 | Not Available | Negative | 3683153 - 3683980 | 30080.0 |
| bifunctional uridylyltransferase/uridylyl-removing protein glnd | D5071_16700 | Not Available | Negative | 3684009 - 3686723 | 104360.0 |
| type i methionyl aminopeptidase | D5071_16705 | Not Available | Negative | 3686765 - 3687559 | 29310.4 |
| 30s ribosomal protein s2 | D5071_16710 | Not Available | Positive | 3687904 - 3688629 | 26698.1 |
| elongation factor ts | D5071_16715 | Not Available | Positive | 3688764 - 3689615 | 30478.8 |
| ump kinase | D5071_16720 | Not Available | Positive | 3689770 - 3690495 | 26033.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
