Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp oxidoreductase | D5071_16310 | Not Available | Negative | 3603410 - 3604036 | 22406.9 |
| lysr family transcriptional regulator | D5071_16315 | Not Available | Positive | 3604138 - 3605025 | 32515.4 |
| sodium/proline symporter putp | D5071_16320 | Not Available | Negative | 3605070 - 3606554 | 53772.7 |
| trifunctional transcriptional regulator/proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase | D5071_16325 | Not Available | Positive | 3606751 - 3610719 | 145150.0 |
| peptidylprolyl isomerase | D5071_16330 | Not Available | Negative | 3610813 - 3611094 | 10280.4 |
| atp-dependent dna helicase rep | D5071_16335 | Not Available | Positive | 3611255 - 3613276 | 77273.8 |
| exopolyphosphatase | D5071_16340 | Not Available | Negative | 3613296 - 3614792 | 55681.5 |
| atp-dependent rna helicase rhlb | D5071_16345 | Not Available | Negative | 3614799 - 3616088 | 48007.3 |
| thioredoxin trxa | D5071_16350 | Not Available | Positive | 3616207 - 3616533 | 11735.3 |
| transcription termination factor rho | D5071_16355 | Not Available | Positive | 3617028 - 3618287 | 46966.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
