Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putrescine aminotransferase | D5071_16155 | Not Available | Negative | 3564689 - 3566119 | 51897.7 |
| sigma-70 family rna polymerase sigma factor | D5071_16165 | Not Available | Positive | 3567127 - 3567636 | 19704.5 |
| duf4880 domain-containing protein | D5071_16170 | Not Available | Positive | 3567736 - 3568689 | 35155.9 |
| tonb-dependent receptor | D5071_16175 | Not Available | Positive | 3568950 - 3571628 | 98309.3 |
| hemophore hasa | D5071_16180 | Not Available | Positive | 3571746 - 3572363 | 21087.2 |
| type i secretion system permease/atpase | D5071_16185 | Not Available | Positive | 3572569 - 3574428 | 66466.4 |
| hlyd family type i secretion periplasmic adaptor subunit | D5071_16190 | Not Available | Positive | 3574493 - 3575851 | 49540.2 |
| peptidase | D5071_16195 | Not Available | Positive | 3575854 - 3577209 | 50833.8 |
| anaerobic c4-dicarboxylate transporter | D5071_16200 | Not Available | Positive | 3578104 - 3579444 | 47949.2 |
| iron-containing alcohol dehydrogenase family protein | D5071_16205 | Not Available | Positive | 3579677 - 3580780 | 39654.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
