Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamylcyclotransferase | D5071_15900 | Not Available | Positive | 3502220 - 3502555 | 12483.5 |
| duf2543 family protein | D5071_15905 | Not Available | Negative | 3502683 - 3502928 | 9463.84 |
| duf1852 domain-containing protein | D5071_15910 | Not Available | Positive | 3503381 - 3504358 | 37432.6 |
| methionine synthase | D5071_15915 | Not Available | Positive | 3504389 - 3505420 | 38549.4 |
| duf2058 domain-containing protein | D5071_15920 | Not Available | Negative | 3505511 - 3506050 | 20150.2 |
| cold shock domain-containing protein | D5071_15925 | Not Available | Negative | 3506230 - 3506712 | 17773.5 |
| duf3320 domain-containing protein | D5071_15930 | Not Available | Negative | 3507066 - 3510641 | 133944.0 |
| is3 family transposase | D5071_15935 | Not Available | Negative | 3510638 - 3511803 | 45268.4 |
| duf4011 domain-containing protein | D5071_15940 | Not Available | Negative | 3511847 - 3513892 | 76928.5 |
| glycosyl hydrolase family protein | D5071_15945 | Not Available | Negative | 3514243 - 3515679 | 53953.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
