Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix domain-containing protein | D5071_15800 | Not Available | Negative | 3483510 - 3483887 | 13588.4 |
| 4-hydroxyphenylacetate 3-monooxygenase | D5071_15805 | Not Available | Negative | 3483871 - 3485307 | 54053.6 |
| hypothetical protein | D5071_15810 | Not Available | Negative | 3485321 - 3486031 | 27090.2 |
| dna topoisomerase iv subunit b | D5071_15815 | Not Available | Negative | 3486725 - 3488620 | 70103.0 |
| esterase yqia | D5071_15820 | Not Available | Negative | 3488705 - 3489286 | 21689.0 |
| 3',5'-cyclic-amp phosphodiesterase | D5071_15825 | Not Available | Negative | 3489286 - 3490113 | 30973.8 |
| duf1249 family protein | D5071_15830 | Not Available | Negative | 3490221 - 3490652 | 16924.6 |
| adp-ribose diphosphatase | D5071_15835 | Not Available | Negative | 3490657 - 3491289 | 23749.0 |
| outer membrane channel protein tolc | D5071_15840 | Not Available | Positive | 3491626 - 3493017 | 50562.1 |
| duf1190 family protein | D5071_15845 | Not Available | Positive | 3493288 - 3493962 | 23428.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
