Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hamp domain-containing protein | D5071_15500 | Not Available | Negative | 3419522 - 3421141 | 58037.8 |
| alpha/beta fold hydrolase | D5071_15505 | Not Available | Negative | 3421352 - 3422452 | 40770.1 |
| peptidase m48 | D5071_15510 | Not Available | Negative | 3422781 - 3423818 | 38657.7 |
| duf898 domain-containing protein | D5071_15515 | Not Available | Negative | 3423828 - 3425009 | 43378.1 |
| gnat family n-acetyltransferase | D5071_15520 | Not Available | Positive | 3425433 - 3425936 | 18253.9 |
| ribonuclease e inhibitor rrab | D5071_15525 | Not Available | Negative | 3426065 - 3426490 | 16033.1 |
| ornithine carbamoyltransferase | D5071_15530 | Not Available | Positive | 3426796 - 3427803 | 36945.3 |
| luxr family transcriptional regulator | D5071_15535 | Not Available | Negative | 3427857 - 3428522 | 25531.5 |
| helix-turn-helix transcriptional regulator | D5071_15540 | Not Available | Negative | 3428527 - 3429210 | 26144.6 |
| yhch/yjgk/yial family protein | D5071_15545 | Not Available | Negative | 3429579 - 3430043 | 17068.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
