Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein uspe | D5071_15240 | Not Available | Negative | 3354010 - 3354960 | 35678.0 |
| fumarate/nitrate reduction transcriptional regulator fnr | D5071_15245 | Not Available | Negative | 3355151 - 3355897 | 27765.7 |
| methylated-dna--[protein]-cysteine s-methyltransferase | D5071_15250 | Not Available | Negative | 3356189 - 3356716 | 19561.4 |
| gfo/idh/moca family oxidoreductase | D5071_15255 | Not Available | Positive | 3357097 - 3358392 | 49008.0 |
| carbohydrate abc transporter substrate-binding protein | D5071_15260 | Not Available | Positive | 3358504 - 3359823 | 48524.0 |
| duf3472 domain-containing protein | D5071_15265 | Not Available | Negative | 3360032 - 3361024 | 37302.5 |
| virulence factor | D5071_15270 | Not Available | Negative | 3362146 - 3364599 | 91911.7 |
| virulence factor srfb | D5071_15275 | Not Available | Negative | 3364596 - 3367583 | 112501.0 |
| hypothetical protein | D5071_15280 | Not Available | Negative | 3367586 - 3368998 | 50105.1 |
| expansin-yoaj | D5071_15285 | Not Available | Negative | 3369287 - 3369976 | 25261.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
