Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane lipoprotein lolb | D5071_15190 | Not Available | Negative | 3343013 - 3343636 | 23749.4 |
| glutamyl-trna reductase | D5071_15195 | Not Available | Positive | 3343869 - 3345125 | 46363.8 |
| peptide chain release factor 1 | D5071_15200 | Not Available | Positive | 3345159 - 3346241 | 40416.6 |
| peptide chain release factor n(5)-glutamine methyltransferase | D5071_15205 | Not Available | Positive | 3346241 - 3347086 | 30664.3 |
| siroheme synthase | D5071_15210 | Not Available | Positive | 3347092 - 3347493 | 15043.0 |
| tetratricopeptide repeat-containing protein | D5071_15215 | Not Available | Positive | 3347496 - 3348305 | 30602.8 |
| 3-deoxy-8-phosphooctulonate synthase | D5071_15220 | Not Available | Positive | 3348381 - 3349235 | 30772.2 |
| duf1471 domain-containing protein | D5071_15225 | Not Available | Negative | 3349411 - 3350364 | 34520.3 |
| re/si-specific nad(p)(+) transhydrogenase subunit alpha | D5071_15230 | Not Available | Positive | 3350943 - 3352472 | 54569.3 |
| re/si-specific nad(p)(+) transhydrogenase subunit beta | D5071_15235 | Not Available | Positive | 3352483 - 3353871 | 48684.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
