Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna1(val) (adenine(37)-n6)-methyltransferase | D5071_14825 | Not Available | Negative | 3266100 - 3266846 | 27646.8 |
| atp-dependent rna helicase srmb | D5071_14830 | Not Available | Positive | 3266981 - 3268306 | 49912.1 |
| autonomous glycyl radical cofactor grca | D5071_14835 | Not Available | Negative | 3268377 - 3268760 | 14345.0 |
| uracil-dna glycosylase | D5071_14840 | Not Available | Positive | 3269152 - 3269838 | 25483.3 |
| metalloprotease | D5071_14845 | Not Available | Positive | 3270443 - 3271195 | 26728.7 |
| luxr family transcriptional regulator | D5071_14850 | Not Available | Positive | 3271873 - 3272418 | 20562.9 |
| biosynthetic arginine decarboxylase | D5071_14855 | Not Available | Negative | 3272598 - 3274580 | 74368.2 |
| duf2684 family protein | D5071_14860 | Not Available | Negative | 3275034 - 3275381 | 12954.8 |
| methionine adenosyltransferase | D5071_14865 | Not Available | Positive | 3275290 - 3276441 | 41788.6 |
| sprt family zinc-dependent metalloprotease | D5071_14870 | Not Available | Positive | 3276761 - 3277273 | 19995.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
