Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubiquinone/menaquinone biosynthesis c-methyltransferase ubie | D5071_00915 | Not Available | Negative | 174671 - 175426 | 28098.9 |
| dna recombination protein rmuc | D5071_00920 | Not Available | Negative | 175559 - 177121 | 58913.8 |
| argininosuccinate lyase | D5071_00925 | Not Available | Negative | 177355 - 178728 | 50388.4 |
| acetylglutamate kinase | D5071_00930 | Not Available | Negative | 178790 - 179563 | 26682.6 |
| n-acetyl-gamma-glutamyl-phosphate reductase | D5071_00935 | Not Available | Negative | 179601 - 180605 | 36257.6 |
| acetylornithine deacetylase | D5071_00940 | Not Available | Positive | 180814 - 181959 | 42145.6 |
| gntr family transcriptional regulator | D5071_00945 | Not Available | Positive | 182014 - 182727 | 27205.8 |
| atp-binding cassette domain-containing protein | D5071_00950 | Not Available | Negative | 182731 - 184860 | 79110.6 |
| thif family adenylyltransferase | D5071_00955 | Not Available | Negative | 184857 - 185936 | 40640.8 |
| thif family adenylyltransferase | D5071_00960 | Not Available | Negative | 185929 - 187056 | 42103.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
