Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cob(i)yrinic acid a,c-diamide adenosyltransferase | D5071_14725 | Not Available | Positive | 3243580 - 3244170 | 21983.2 |
| retention module-containing protein | D5071_14730 | Not Available | Negative | 3244315 - 3245165 | 28635.8 |
| channel protein tolc | D5071_14735 | Not Available | Positive | 3245548 - 3246900 | 50389.4 |
| type i secretion system permease/atpase | D5071_14740 | Not Available | Positive | 3246979 - 3249231 | 82233.5 |
| hlyd family type i secretion periplasmic adaptor subunit | D5071_14745 | Not Available | Positive | 3249218 - 3250579 | 50691.2 |
| sensor domain-containing diguanylate cyclase | D5071_14750 | Not Available | Negative | 3250621 - 3252135 | 56883.6 |
| cyclic-guanylate-specific phosphodiesterase | D5071_14755 | Not Available | Negative | 3252923 - 3253699 | 29480.6 |
| yfhl family 4fe-4s dicluster ferredoxin | D5071_14760 | Not Available | Positive | 3254184 - 3254444 | 9821.81 |
| holo-acp synthase | D5071_14765 | Not Available | Negative | 3254463 - 3254843 | 14168.1 |
| pyridoxine 5'-phosphate synthase | D5071_14770 | Not Available | Negative | 3254843 - 3255574 | 26705.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
