Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr03758 family integrating conjugative element protein | D5071_14565 | Not Available | Negative | 3216956 - 3217195 | 8609.6 |
| hypothetical protein | D5071_14570 | Not Available | Negative | 3217197 - 3217517 | 11663.7 |
| duf4238 domain-containing protein | D5071_14575 | Not Available | Positive | 3217656 - 3218750 | 42848.7 |
| hypothetical protein | D5071_14580 | Not Available | Negative | 3218843 - 3219037 | 7281.56 |
| tigr03747 family integrating conjugative element membrane protein | D5071_14585 | Not Available | Negative | 3219060 - 3219815 | 28389.9 |
| conjugative coupling factor trad, pfgi-1 class | D5071_14590 | Not Available | Negative | 3219817 - 3221898 | 76943.3 |
| restriction endonuclease | D5071_14595 | Not Available | Negative | 3221895 - 3222497 | 22763.1 |
| integrating conjugative element protein | D5071_14600 | Not Available | Negative | 3222494 - 3223015 | 18513.3 |
| lytic transglycosylase domain-containing protein | D5071_14605 | Not Available | Negative | 3223016 - 3223600 | 22126.4 |
| tigr03759 family integrating conjugative element protein | D5071_14610 | Not Available | Negative | 3223600 - 3224313 | 26489.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
