Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h-flavin reductase | D5071_00865 | Not Available | Negative | 165721 - 166422 | 26106.4 |
| 4-hydroxy-3-polyprenylbenzoate decarboxylase | D5071_00870 | Not Available | Negative | 166475 - 167971 | 56568.0 |
| transcription/translation regulatory transformer protein rfah | D5071_00875 | Not Available | Positive | 168172 - 168660 | 18406.3 |
| porphobilinogen synthase | D5071_00880 | Not Available | Negative | 168773 - 169795 | 37792.5 |
| 3'-5' ssdna/rna exonuclease tatd | D5071_00885 | Not Available | Negative | 169813 - 170595 | 29168.7 |
| sec-independent protein translocase subunit tatc | D5071_00890 | Not Available | Negative | 170702 - 171454 | 27879.0 |
| sec-independent protein translocase subunit tatb | D5071_00895 | Not Available | Negative | 171458 - 172051 | 21387.9 |
| sec-independent protein translocase subunit tata | D5071_00900 | Not Available | Negative | 172055 - 172315 | 9145.93 |
| ubiquinone biosynthesis regulatory protein kinase ubib | D5071_00905 | Not Available | Negative | 172398 - 174038 | 62690.9 |
| scp2 domain-containing protein | D5071_00910 | Not Available | Negative | 174035 - 174658 | 23656.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
