Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ygdi/ygdr family lipoprotein | D5071_14210 | Not Available | Positive | 3152272 - 3152478 | 7481.09 |
| nadp(h)-dependent aldo-keto reductase | D5071_14220 | Not Available | Positive | 3152686 - 3153747 | 39234.5 |
| duf2884 family protein | D5071_14225 | Not Available | Negative | 3153805 - 3154518 | 26500.8 |
| duf469 domain-containing protein | D5071_14230 | Not Available | Negative | 3154633 - 3154977 | 13419.0 |
| trna (guanosine(46)-n7)-methyltransferase trmb | D5071_14235 | Not Available | Negative | 3154979 - 3155698 | 27194.9 |
| adenine dna glycosylase | D5071_14240 | Not Available | Positive | 3155864 - 3156970 | 41794.2 |
| fe(2+)-trafficking protein | D5071_14245 | Not Available | Positive | 3156967 - 3157239 | 10688.8 |
| membrane-bound lytic murein transglycosylase mltc | D5071_14250 | Not Available | Positive | 3157292 - 3158365 | 39904.5 |
| arac family transcriptional regulator | D5071_14255 | Not Available | Positive | 3158461 - 3159531 | 39671.6 |
| alpha/beta fold hydrolase | D5071_14260 | Not Available | Negative | 3159494 - 3160537 | 37492.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
