Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein | D5071_13950 | Not Available | Positive | 3089489 - 3090022 | 19859.0 |
| yscq/hrcq family type iii secretion apparatus protein | D5071_13955 | Not Available | Positive | 3090019 - 3091176 | 42186.3 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | D5071_13960 | Not Available | Positive | 3091173 - 3091826 | 23993.4 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | D5071_13965 | Not Available | Positive | 3091834 - 3092094 | 9259.1 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | D5071_13970 | Not Available | Positive | 3092101 - 3092904 | 29242.2 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | D5071_13975 | Not Available | Positive | 3092915 - 3093994 | 40497.7 |
| lysr family transcriptional regulator | D5071_13980 | Not Available | Negative | 3094005 - 3094931 | 34410.9 |
| m20 peptidase family dipeptidase | D5071_13985 | Not Available | Positive | 3095074 - 3096474 | 51319.8 |
| lipoprotein bor | D5071_13990 | Not Available | Negative | 3096567 - 3096857 | 10253.6 |
| metal abc transporter substrate-binding protein | D5071_13995 | Not Available | Negative | 3097054 - 3097863 | 29623.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
