Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | D5071_13900 | Not Available | Negative | 3078725 - 3079795 | 39758.1 |
| dna-binding response regulator | D5071_13905 | Not Available | Negative | 3080174 - 3080815 | 23372.7 |
| pas domain s-box protein | D5071_13910 | Not Available | Negative | 3080852 - 3082321 | 55839.1 |
| rna polymerase sigma factor | D5071_13915 | Not Available | Negative | 3082562 - 3083107 | 20953.2 |
| hypothetical protein | D5071_13920 | Not Available | Positive | 3083108 - 3083296 | 7005.73 |
| yopn family type iii secretion system gatekeeper subunit | D5071_13925 | Not Available | Positive | 3083446 - 3084654 | 44187.5 |
| escv/yscv/hrcv family type iii secretion system export apparatus protein | D5071_13930 | Not Available | Positive | 3084651 - 3086753 | 77666.7 |
| escd/yscd/hrpq family type iii secretion system inner membrane ring protein | D5071_13935 | Not Available | Positive | 3086763 - 3087698 | 34111.7 |
| escn/yscn/hrcn family type iii secretion system atpase | D5071_13940 | Not Available | Positive | 3087698 - 3089065 | 49209.9 |
| type iii secretion protein | D5071_13945 | Not Available | Positive | 3089055 - 3089492 | 17251.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
