Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein hrpt | D5071_13850 | Not Available | Negative | 3070942 - 3071133 | 7022.42 |
| escc/yscc/hrcc family type iii secretion system outer membrane ring protein | D5071_13855 | Not Available | Negative | 3071161 - 3073230 | 75650.0 |
| type iii secretion protein | D5071_13860 | Not Available | Negative | 3073223 - 3073657 | 15743.0 |
| serine kinase | D5071_13865 | Not Available | Negative | 3073644 - 3073868 | 8039.34 |
| hrpe/yscl family type iii secretion apparatus protein | D5071_13870 | Not Available | Negative | 3074015 - 3074614 | 22303.6 |
| type iii secretion protein | D5071_13875 | Not Available | Negative | 3074652 - 3075281 | 23706.6 |
| escj/yscj/hrcj family type iii secretion inner membrane ring protein | D5071_13880 | Not Available | Negative | 3075278 - 3076045 | 28077.3 |
| type iii secretion protein | D5071_13885 | Not Available | Negative | 3076052 - 3076423 | 13069.2 |
| hypothetical protein | D5071_13890 | Not Available | Negative | 3076493 - 3076699 | 6923.14 |
| eal domain-containing protein | D5071_13895 | Not Available | Positive | 3077046 - 3078626 | 59312.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
