Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | D5071_13795 | Not Available | Positive | 3042265 - 3042949 | 26271.4 |
| filamentous hemagglutinin n-terminal domain-containing protein | D5071_13800 | Not Available | Negative | 3042950 - 3059018 | 554886.0 |
| shlb/fhac/hecb family hemolysin secretion/activation protein | D5071_13805 | Not Available | Negative | 3059069 - 3060733 | 62086.7 |
| dspfavrf family protein | D5071_13815 | Not Available | Negative | 3061084 - 3061506 | 15470.0 |
| avre-family type 3 secretion system effector | D5071_13820 | Not Available | Negative | 3061542 - 3066425 | 173176.0 |
| pectate lyase | D5071_13825 | Not Available | Positive | 3066601 - 3068082 | 47823.0 |
| dna-binding protein | D5071_13830 | Not Available | Positive | 3068084 - 3068407 | 12132.3 |
| hypothetical protein | D5071_13835 | Not Available | Negative | 3068536 - 3068994 | 18213.4 |
| type iii secretion protein hrpn | D5071_13840 | Not Available | Negative | 3069387 - 3070457 | 35634.4 |
| type iii secretion protein | D5071_13845 | Not Available | Negative | 3070602 - 3070949 | 12999.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
