Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| appr-1-p processing protein | D5071_00805 | Not Available | Positive | 152246 - 153295 | 39380.3 |
| site-specific integrase | D5071_00810 | Not Available | Negative | 153367 - 154686 | 49264.6 |
| alkylphosphonate utilization protein | D5071_00825 | Not Available | Positive | 156398 - 156739 | 12247.6 |
| murein transglycosylase b | D5071_00830 | Not Available | Positive | 156878 - 157963 | 40063.5 |
| menaquinone-dependent protoporphyrinogen ix dehydrogenase | D5071_00835 | Not Available | Negative | 158083 - 158615 | 20354.4 |
| trk system potassium transporter trkh | D5071_00840 | Not Available | Negative | 158637 - 160088 | 52838.9 |
| impact family protein | D5071_00845 | Not Available | Negative | 160131 - 160742 | 21621.2 |
| xaa-pro dipeptidase | D5071_00850 | Not Available | Negative | 160742 - 162073 | 50334.9 |
| fatty acid oxidation complex subunit alpha fadb | D5071_00855 | Not Available | Positive | 162259 - 164448 | 79184.1 |
| acetyl-coa c-acyltransferase fada | D5071_00860 | Not Available | Positive | 164460 - 165623 | 41045.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
