Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold shock protein cspg | D5071_13590 | Not Available | Negative | 2994609 - 2994821 | 7538.89 |
| duf2511 domain-containing protein | D5071_13595 | Not Available | Negative | 2995352 - 2995708 | 13204.1 |
| non-heme ferritin | D5071_13600 | Not Available | Negative | 2995993 - 2996499 | 19168.8 |
| dna polymerase iii subunit theta | D5071_13605 | Not Available | Positive | 2996872 - 2997102 | 9153.98 |
| integrase | D5071_13610 | Not Available | Positive | 2997602 - 2997835 | 9025.84 |
| trna 2-thiocytidine(32) synthetase ttca | D5071_13615 | Not Available | Positive | 2997884 - 2998819 | 35474.8 |
| zinc transporter zntb | D5071_13620 | Not Available | Negative | 2999611 - 3000594 | 36579.4 |
| peptide abc transporter substrate-binding protein | D5071_13625 | Not Available | Negative | 3000714 - 3002330 | 60235.2 |
| murein tripeptide amidase mpaa | D5071_13630 | Not Available | Positive | 3002496 - 3003215 | 25896.7 |
| thiol peroxidase | D5071_13635 | Not Available | Positive | 3003295 - 3003798 | 17612.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
