Pectobacterium carotovorum strain S1.15.11.2D

BacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium carotovorum strain S1.15.11.2D is a Gram-negative, facultative anaerobic bacterium characterized by its bacilli shape and mobility, attributed to the presence of flagella. It falls within the mesophilic temperature range, indicating that it thrives in moderate temperature conditions. This strain is free-living and exhibits a biotic relationship with various hosts, including species from the Viridiplantae kingdom such as Solanum tuberosum (potato), Daucus carota (carrot), Beta vulgaris subsp. vulgaris (beet), and Brassica oleracea var. italica (broccoli). Pectobacterium carotovorum is notably associated with plant diseases, causing soft rot and potato blackleg and soft rot, which can significantly impact agricultural productivity and food supply. The strain has a single replicon, which is relevant for its genetic stability and replication characteristics. The accession number for this strain is QZDH00000000.1, providing a reference for further genetic and genomic studies. In terms of ecological impact, Pectobacterium carotovorum strain S1.15.11.2D plays a critical role in the decomposition process of plant material in its environments. By causing soft rot in various crops, it contributes to nutrient cycling and soil health, although it also poses challenges for agricultural practices due to its pathogenicity. Understanding the biology and ecology of this strain is essential for developing management strategies to mitigate its negative effects on crops while appreciating its role in the ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium carotovorum
Strainstrain S1.15.11.2D

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pectobacterium carotovorum strain S1.15.11.2D
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Viridiplantae, Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium carotovorum strain S1.15.11.2D contig_91, whole

Gene Summary

Adenine Count

1180518 bp

Thymine Count

1171732 bp

Guanine Count

1226236 bp

Cytosine Count

1240350 bp

Genome Length

4818836 bp

Protein-coding Genes

4141 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cupin domain-containing proteinD5071_13485Not AvailablePositive2971288 - 297240942356.7
peptidase tD5071_13490Not AvailableNegative2972488 - 297372045120.9
spermidine/putrescine abc transporter atp-binding protein potaD5071_13495Not AvailablePositive2974080 - 297519541899.3
spermidine/putrescine abc transporter permease potbD5071_13500Not AvailablePositive2975179 - 297603932383.3
spermidine/putrescine abc transporter permease potcD5071_13505Not AvailablePositive2976036 - 297681228620.2
spermidine/putrescine abc transporter substrate-binding protein potdD5071_13510Not AvailablePositive2976902 - 297794538696.8
methylated-dna--[protein]-cysteine s-methyltransferaseD5071_13515Not AvailableNegative2978001 - 297853719146.1
mfs transporterD5071_13520Not AvailableNegative2978657 - 297988343349.9
arac family transcriptional regulatorD5071_13525Not AvailablePositive2979990 - 298084732680.3
ybhb/ybcl family raf kinase inhibitor-like proteinD5071_13530Not AvailablePositive2981105 - 298173722626.3

Displaying genes 2641 – 2650 of 4263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Soft rotCausesPMC11149725
Potato blacklegCausesPMC11677604
Potato soft rotCausesPMC5376619

Displaying health effects 1 – 3 of 3 in total