Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | D5071_13385 | Not Available | Positive | 2947079 - 2947633 | 20947.9 |
| amino acid abc transporter permease | D5071_13390 | Not Available | Positive | 2947716 - 2948660 | 35126.6 |
| amino acid abc transporter atp-binding protein | D5071_13395 | Not Available | Positive | 2948685 - 2949509 | 30676.0 |
| hypothetical protein | D5071_13400 | Not Available | Positive | 2949930 - 2952611 | 101354.0 |
| type iii effector hrpk | D5071_13405 | Not Available | Negative | 2953107 - 2954867 | 61923.0 |
| porin | D5071_13410 | Not Available | Positive | 2955637 - 2956455 | 31337.3 |
| porin | D5071_13415 | Not Available | Positive | 2956588 - 2957340 | 28388.7 |
| hypothetical protein | D5071_13420 | Not Available | Negative | 2957356 - 2957607 | 8987.39 |
| pectate lyase | D5071_13425 | Not Available | Positive | 2957661 - 2959367 | 63550.4 |
| extracellular solute-binding protein | D5071_13430 | Not Available | Negative | 2959568 - 2960689 | 42137.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
