Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyridoxal-dependent decarboxylase, exosortase a system-associated | D5071_00740 | Not Available | Positive | 142620 - 143834 | 43676.9 |
| dienelactone hydrolase | D5071_00745 | Not Available | Positive | 143874 - 144890 | 36402.5 |
| deor family transcriptional regulator | D5071_00760 | Not Available | Positive | 146999 - 147697 | 26409.9 |
| hypothetical protein | D5071_00765 | Not Available | Positive | 147879 - 148448 | 21854.2 |
| hypothetical protein | D5071_00775 | Not Available | Positive | 148974 - 149207 | 7861.19 |
| dna repair protein radc | D5071_00780 | Not Available | Positive | 149292 - 149765 | 17496.2 |
| type iv toxin-antitoxin system yeeu family antitoxin | D5071_00785 | Not Available | Positive | 149805 - 150140 | 12357.7 |
| toxin | D5071_00790 | Not Available | Positive | 150209 - 150529 | 12066.5 |
| duf4942 domain-containing protein | D5071_00795 | Not Available | Positive | 150647 - 151480 | 32285.5 |
| duf4433 domain-containing protein | D5071_00800 | Not Available | Positive | 151585 - 152232 | 24941.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
