Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1778 domain-containing protein | D5071_12680 | Not Available | Negative | 2790598 - 2790891 | 10886.1 |
| aspartyl/asparaginyl beta-hydroxylase domain-containing protein | D5071_12690 | Not Available | Negative | 2793108 - 2793797 | 26674.5 |
| atp-grasp domain-containing protein | D5071_12695 | Not Available | Negative | 2793809 - 2794978 | 43491.5 |
| class i sam-dependent methyltransferase | D5071_12700 | Not Available | Negative | 2794978 - 2795823 | 32288.6 |
| trm112 family protein | D5071_12705 | Not Available | Negative | 2795795 - 2795968 | 6513.75 |
| gnat family n-acetyltransferase | D5071_12710 | Not Available | Negative | 2795961 - 2796974 | 38456.1 |
| alanine--glyoxylate aminotransferase family protein | D5071_12715 | Not Available | Negative | 2796971 - 2798107 | 41007.5 |
| 2-aminoethylphosphonate--pyruvate transaminase | D5071_12720 | Not Available | Negative | 2798043 - 2799143 | 39491.4 |
| hypothetical protein | D5071_12725 | Not Available | Negative | 2799158 - 2799982 | 31178.8 |
| pyridoxal phosphate-dependent aminotransferase | D5071_12730 | Not Available | Negative | 2799982 - 2801175 | 44766.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
