Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid kinase yegs | D5071_12580 | Not Available | Positive | 2771119 - 2772033 | 32980.6 |
| phosphate-starvation-inducible protein psie | D5071_12585 | Not Available | Negative | 2772062 - 2772469 | 15259.2 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | D5071_12590 | Not Available | Negative | 2772678 - 2773481 | 28890.7 |
| hydroxyethylthiazole kinase | D5071_12595 | Not Available | Negative | 2773478 - 2774272 | 27407.8 |
| nad(p)-dependent alcohol dehydrogenase | D5071_12600 | Not Available | Positive | 2774566 - 2775585 | 36207.6 |
| ggdef domain-containing protein | D5071_12605 | Not Available | Positive | 2775729 - 2776652 | 35245.7 |
| hypothetical protein | D5071_12610 | Not Available | Negative | 2776835 - 2777653 | 31027.9 |
| sulfite exporter taue/safe family protein | D5071_12615 | Not Available | Negative | 2777867 - 2778619 | 26449.4 |
| lysr family transcriptional regulator | D5071_12620 | Not Available | Positive | 2778862 - 2779764 | 32813.0 |
| duf3750 domain-containing protein | D5071_12625 | Not Available | Negative | 2779781 - 2780554 | 28354.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
