Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-4-amino-4-deoxy-l-arabinose aminotransferase | D5071_12325 | Not Available | Negative | 2707316 - 2708464 | 41943.7 |
| nucleotide sugar dehydrogenase | D5071_12330 | Not Available | Negative | 2708685 - 2709851 | 43786.5 |
| ggdef domain-containing protein | D5071_12335 | Not Available | Positive | 2710409 - 2711956 | 57862.8 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | D5071_12340 | Not Available | Positive | 2712093 - 2712956 | 30985.6 |
| ribosome-associated protein ybcj | D5071_12345 | Not Available | Positive | 2712993 - 2713205 | 7528.97 |
| cysteine--trna ligase | D5071_12350 | Not Available | Negative | 2713297 - 2714682 | 52337.9 |
| doxx family protein | D5071_12355 | Not Available | Negative | 2714953 - 2715384 | 15343.3 |
| peptidylprolyl isomerase b | D5071_12360 | Not Available | Positive | 2715806 - 2716300 | 18105.3 |
| udp-2,3-diacylglucosamine diphosphatase | D5071_12365 | Not Available | Positive | 2716311 - 2717033 | 27470.2 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | D5071_12370 | Not Available | Positive | 2717213 - 2717722 | 17505.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
