Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine transaminase | D5071_12160 | Not Available | Negative | 2671145 - 2672386 | 45900.3 |
| l-ala-d/l-glu epimerase | D5071_12165 | Not Available | Positive | 2672772 - 2673752 | 35731.8 |
| d-amino-acid transaminase | D5071_12170 | Not Available | Positive | 2673795 - 2674655 | 32116.4 |
| mechanosensitive ion channel family protein | D5071_12175 | Not Available | Negative | 2674929 - 2677382 | 88252.8 |
| Trna-arg | Not Available | Not Available | Positive | 2677779 - 2677855 | Not Available |
| hypothetical protein | D5071_12195 | Not Available | Positive | 2678479 - 2678784 | 11670.9 |
| nuclease | D5071_12200 | Not Available | Negative | 2678876 - 2679979 | 41608.9 |
| restriction endonuclease subunit s | D5071_12205 | Not Available | Negative | 2679990 - 2681777 | 67019.7 |
| sam-dependent dna methyltransferase | D5071_12210 | Not Available | Negative | 2681777 - 2683249 | 55701.0 |
| dead/deah box helicase | D5071_12215 | Not Available | Negative | 2683322 - 2685763 | 92882.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
