Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein gspg | D5071_12110 | Not Available | Negative | 2659529 - 2659999 | 17403.8 |
| type ii secretion system protein gspf | D5071_12115 | Not Available | Negative | 2660032 - 2661258 | 45213.9 |
| type ii secretion system protein gspe | D5071_12120 | Not Available | Negative | 2661260 - 2662756 | 55267.0 |
| type ii secretion system protein gspd | D5071_12125 | Not Available | Negative | 2662753 - 2664807 | 74394.7 |
| type ii secretion system protein gspc | D5071_12130 | Not Available | Negative | 2664794 - 2665657 | 31039.8 |
| glycoside hydrolase family 28 protein | D5071_12135 | Not Available | Negative | 2665708 - 2667687 | 71714.9 |
| pectate lyase | D5071_12140 | Not Available | Negative | 2667828 - 2669396 | 56853.9 |
| hypothetical protein | D5071_12145 | Not Available | Negative | 2669852 - 2670037 | 6903.8 |
| general secretion pathway protein | D5071_12150 | Not Available | Positive | 2670044 - 2670613 | 20384.6 |
| lipoprotein, puls/outs family | D5071_12155 | Not Available | Negative | 2670610 - 2671023 | 14508.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
