Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator nrdr | D5071_11960 | Not Available | Negative | 2631640 - 2632089 | 17230.9 |
| duf3251 domain-containing protein | D5071_11965 | Not Available | Positive | 2632309 - 2632878 | 20418.5 |
| protein translocase subunit secf | D5071_11970 | Not Available | Negative | 2633075 - 2634049 | 35581.9 |
| protein translocase subunit secd | D5071_11975 | Not Available | Negative | 2634059 - 2635906 | 66808.3 |
| preprotein translocase subunit yajc | D5071_11980 | Not Available | Negative | 2635934 - 2636266 | 11798.7 |
| trna guanosine(34) transglycosylase tgt | D5071_11985 | Not Available | Negative | 2636393 - 2637538 | 43401.0 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | D5071_11990 | Not Available | Negative | 2637635 - 2638702 | 39184.6 |
| acp phosphodiesterase | D5071_11995 | Not Available | Positive | 2638890 - 2639471 | 22779.2 |
| peroxiredoxin | D5071_12000 | Not Available | Positive | 2639872 - 2640474 | 22174.5 |
| miniconductance mechanosensitive channel | D5071_12005 | Not Available | Positive | 2640698 - 2641972 | 47367.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
