Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 7-cyano-7-deazaguanine synthase quec | D5071_11810 | Not Available | Positive | 2599960 - 2600655 | 25324.1 |
| ybgc/fadm family acyl-coa thioesterase | D5071_11815 | Not Available | Negative | 2600752 - 2601150 | 15264.3 |
| competence protein comea | D5071_11820 | Not Available | Negative | 2601256 - 2601621 | 12531.2 |
| peptidylprolyl isomerase | D5071_11825 | Not Available | Negative | 2601760 - 2603640 | 68909.0 |
| dna-binding protein hu-beta | D5071_11830 | Not Available | Negative | 2603909 - 2604181 | 9354.19 |
| endopeptidase la | D5071_11835 | Not Available | Negative | 2604379 - 2606760 | 88225.4 |
| atp-dependent protease atp-binding subunit clpx | D5071_11840 | Not Available | Negative | 2606953 - 2608227 | 46465.8 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | D5071_11845 | Not Available | Negative | 2608391 - 2609014 | 23022.9 |
| trigger factor | D5071_11850 | Not Available | Negative | 2609550 - 2610854 | 48143.2 |
| transcriptional regulator bola | D5071_11855 | Not Available | Negative | 2611169 - 2611483 | 11383.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
